Explore 8 python software developer jobs from 2 hiring companies in Mora, NM, US. Filter by remote, salary, experience, and company, then open any listing to apply.

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Python Software Developer Jobs

Cadence Design Systems

OpenEye

OpenEye Scientific

Onsite

Hybrid

<h2><b><span class="emphasis">At Cadence, we hire and develop leaders and innovators who want to make an impact on the world of technology.</span></b></h2><p><b><span>OpenEye, Cadence Molecular Sciences, </span></b><span>an industry leader in computational molecular design, uses a scientific approach to deliver rapid, robust, and scalable software, toolkits, and technology &amp; design services for the advancement of pharmaceuticals, biologics, agrochemicals, and flavors and fragrances. We are passionate about science and about taking care of our team members, with leaders supporting your development and recognizing your contributions by providing an unmatched total compensation package in a collaborative, caring, energetic and fun work environment.</span></p><p></p><p>The Affinity Group at OpenEye seeks to hire a scientific software developer to join a growing team delivering Molecular Dynamics (MD) based solutions for predicting protein-ligand binding affinities.  Within OpenEye’s Cloud-based platform Orion, our team has already delivered to our clients massively parallel Relative Binding Free Energy (RBFE) tools capable of calculating affinities on dozens of ligands in only hours, using hundreds of GPUs. We are also developing faster, higher throughput MD-based prescreening approaches to use upstream of the heavier free energy methods. With your experience in MD and programming, you will help us to extend our capabilities in this area, making both our science and our tools better: more robust, more accurate, and more efficient. The work you do will have a high impact, contributing to the science of many organizations, both industry-based and academic. In this you will be collaborating with experienced scientific developers with expertise in small molecule drug discovery and long track records of delivering useful solutions and liaising with academic collaborators in the simulations community.</p><p></p><p><b><i><span>Please include a cover letter.</span></i></b><br /> </p><p><b><span>What you should have:</span></b></p><ul><li>PhD. with PostDoc in an area related to structure-based ligand design methods.</li><li>3 or more years of experience in scientific programming with Python.</li><li>3 or more years of experience with Molecular Dynamics including Free Energy Calculations.</li><li>Experience in computational chemistry methods development, implementation, and validation</li><li>Team-oriented with good communication skills and professional scientific presentation skills.</li><li>Ability and desire to learn new ideas and adapt to new development practices<br /> </li></ul><p><b><span>The following are a PLUS, but not required:</span></b></p><ul><li>Knowledge &amp; skill in programming and professional software development practices &amp; tools</li><li>Experience with a multi platform and/or distributed computing environment including cloud computing.</li><li>Knowledge of chemistry and/or drug discovery &amp; development</li></ul><p></p><p><b><span>Benefits:</span></b><br />OpenEye is passionate about the welfare of its employees and offers competitive benefits that include medical, dental, vision, flexible working schedule, 401k retirement plans, paid vacation, paid sick leave, home internet costs, public transportation reimbursement, and much more.</p><p></p><h2><span class="emphasis"><b>We’re doing work that matters. Help us solve what others can’t.</b></span></h2>

Scientific Software Developer - Affinity

Scientific Software Developer

PhD with postdoc; 3+ yrs Python; 3+ yrs Molecular Dynamics and free energy calculations; computational chemistry methods development and validation.

<h2><b><span class="emphasis">At Cadence, we hire and develop leaders and innovators who want to make an impact on the world of technology.</span></b></h2><p><b><span>OpenEye, Cadence Molecular Sciences</span></b><span> – a division of Cadence Design Systems – is an industry leader in computational molecular design through rapid, robust, and scalable software, consulting services, and Orion®, the only cloud-native fully integrated software-as-a-service molecular modeling platform. Combining unlimited computation and storage with powerful tools for data sharing, visualization and analysis in a customizable development platform, Orion offers unprecedented capabilities for the advancement of pharmaceuticals, biologics, agrochemicals, and flavors and fragrances. OpenEye, Cadence Molecular Sciences is headquartered in Santa Fe, N.M., with offices in Boston, Mass.; Cologne, Germany; and Tokyo, Japan.</span> </p><p></p><p>We are looking for a Computational Chemist/Cheminformatician to join our team of experts in mathematics, computational modeling, and medicinal chemistry.  This highly focused team will work together to drive forward technology which leverages OpenEye’s Orion platform to better enable scientists in the pharmaceutical industry working on projects from lead development to clinical candidate selection.  This role will require interactions with customers and OpenEye’s scientific and technical teams.</p><p></p><p><b><span>What you’ll do:</span></b></p><ul><li>Extend OpenEye’s programming toolkits by developing and implementing new and useful scientific and technical features to aid customers in developing bespoke solutions.</li><li>Explore methods for further enhancing OpenEye’s virtual screening platform (including OMEGA, ROCS, FastROCS, OEDocking).</li><li>Apply chemistry/cheminformatics expertise with ML experts to build robust, scalable models to support data-driven decision making.</li><li>Work on retrospective and prospective projects both internally and with collaborators to validate methodologies.</li><li>Work with Orion project team to further optimize compound design workflows in Orion.<br /> </li></ul><p><b><span>What you should have:</span></b></p><ul><li>PhD (or equivalent experience) in computational chemistry, chemistry, cheminformatics, or related field with 0 – 3 years relevant experience</li><li>Knowledge of some traditional computational chemistry approaches such as docking, virtual screening, molecular modeling, etc.</li><li>Programming expertise, ideally in c&#43;&#43; and/or python preferably with experience using AI coding agents</li><li>Experience in or desire to learn about the pharmaceutical industry</li><li>Strong desire to find practical solutions to challenging problems</li><li>Demonstrated ability to work both as part of a team and independently</li></ul><p></p><p><b><span>The following are a PLUS, but not required:</span></b></p><ul><li>Experience with OpenEye software/toolkits</li><li>Expertise with diffusion models, transformers or 3D ML representations</li><li>Experience with synthetically accessible, pharmaceutically relevant generative chemistry</li></ul><p></p><p><b><span>Benefits:</span></b><br /><span>We are passionate about the welfare of our employees and offer competitive benefits that include medical, dental, vision, flexible working schedule, 401k retirement plans, paid vacation, paid sick leave, home internet costs, public transportation reimbursement,  and much more.</span></p><p></p><p><b><i><span>Please submit your cover letter and resume as one document.</span></i></b></p><p><i><span>OpenEye Scientific Software is an Equal Opportunity Employer.</span></i></p><h2><span class="emphasis"><b>We’re doing work that matters. Help us solve what others can’t.</b></span></h2>

Scientific Software Developer II – Modeler

PhD or equivalent in computational chemistry, chemistry, cheminformatics, or related field; 0-3 years experience; programming in C++ and/or Python; knowledge of docking, virtual screening, molecular modeling; ability to work in a team and independently.

<h2><b><span class="emphasis">At Cadence, we hire and develop leaders and innovators who want to make an impact on the world of technology.</span></b></h2><p><b><span>OpenEye, Cadence Molecular Sciences</span></b><span> – a division of Cadence Design Systems – is an industry leader in computational molecular design through rapid, robust, and scalable software, consulting services, and Orion®, the only cloud-native fully integrated software-as-a-service molecular modeling platform. Combining unlimited computation and storage with powerful tools for data sharing, visualization and analysis in a customizable development platform, Orion offers unprecedented capabilities for the advancement of pharmaceuticals, biologics, agrochemicals, and flavors and fragrances. OpenEye, Cadence Molecular Sciences is headquartered in Santa Fe, N.M., with offices in Boston, Mass.; Cologne, Germany; and Tokyo, Japan. </span></p><p></p><p><span>We are looking for a lead scientific software developer to join a growing team of experts working on biologics and protein design. The highly focused team will work together to drive forward technologies which leverage AI and OpenEye’s long standing 3D modeling capabilities in our cloud platform, Orion. The team’s guiding principle is to deliver solutions that better enable scientists in the pharmaceutical and biotech industries to develop next generation biologic medicines.</span></p><p></p><p><b><span>What you’ll do:</span></b></p><ul><li>Work on challenging problems and help find practical solutions that advance the field of computational biologics drug discovery</li><li>Develop highly scalable and integrated solutions for biologics drug discovery in the cloud</li><li>Develop data-driven models using sequence and 3D molecular shape representations leveraging AI and physics-based approaches</li><li>Expand OpenEye’s biomolecular modeling and protein informatics technologies</li><li>Collaborate with great colleagues within our group, within OpenEye &amp; Cadence, as well as within the broader pharmaceutical industry on developing new methods, tools, and solutions</li></ul><p></p><p><b><span>What you should have:</span></b></p><ul><li>PhD (or equivalent experience) in computational chemistry, structural biology, biochemistry, or related field with a least 5 years relevant experience</li><li>Strong desire to change the field of biologics drug discovery through hard work, creating robust software tools, and critical scientific evaluation.</li><li>Demonstrated ability to work both independently and as part of a team. Ability to work humbly with others, admitting mistakes and constructively working through differences in opinion.</li><li>Experience with molecular dynamics simulations and machine learning</li><li>Programming expertise, ideally in Python, preferably with experience using AI coding agents</li></ul><ul><li>Proven track record of delivering software solutions<br /> </li></ul><p><b><span>The following are a PLUS, but not required:</span></b></p><ul><li>Expertise with traditional machine learning and/or modern deep learning methods</li><li>Experience with OpenEye software/toolkits or other computational chemistry toolkits</li><li>Experience with protein language models and protein folding technologies</li><li><span>Experience with modeling antibodies based on sequence and structural data</span></li></ul><h2><span class="emphasis"><b>We’re doing work that matters. Help us solve what others can’t.</b></span></h2>

Lead Scientific Developer – Biologics & Protein Design

Lead Scientific Developer

PhD (or equivalent) in computational chemistry, structural biology, biochemistry, or related field; ~5 years of relevant experience; strong software tools development skills.

<p><span>Over the last eight years, OpenEye Scientific has developed the field’s most advanced large-scale compute platform, Orion, built on Amazon Web Services. In this position, you will be working at the cutting edge of cloud computing, C&#43;&#43;/Python development, and advanced MD simulation techniques. Your work will have the potential to make a major impact in drug discovery, and will be available to many pharmaceutical and biotech companies.</span></p><p><b><span>OpenEye, Cadence Molecular Sciences, </span></b><span>an industry leader in computational molecular design, uses a scientific approach to deliver rapid, robust, and scalable software, toolkits, and technology &amp; design services for the advancement of pharmaceuticals, biologics, agrochemicals, and flavors and fragrances. We are passionate about science and about taking care of our team members, with leaders supporting your development and recognizing your contributions by providing an unmatched total compensation package in a collaborative, caring, energetic and fun work environment.</span></p><p></p><p>The Affinity Group at OpenEye seeks to hire a scientific software developer to join a growing team delivering Molecular Dynamics (MD) based solutions for predicting protein-ligand binding affinities.  Within OpenEye’s Cloud-based platform Orion, our team has already delivered to our clients massively parallel Relative Binding Free Energy (RBFE) tools capable of calculating affinities on dozens of ligands in only hours, using hundreds of GPUs. We are also developing faster, higher throughput MD-based prescreening approaches to use upstream of the heavier free energy methods. With your experience in MD and programming, you will help us to extend our capabilities in this area, making both our science and our tools better: more robust, more accurate, and more efficient. The work you do will have a high impact, contributing to the science of many organizations, both industry-based and academic. In this you will be collaborating with experienced scientific developers with expertise in small molecule drug discovery and long track records of delivering useful solutions and liaising with academic collaborators in the simulations community.</p><p></p><p><b><i><span>Please include a cover letter.</span></i></b><br /> </p><p><b><span>What you should have:</span></b></p><ul><li>PhD. with PostDoc in an area related to structure-based ligand design methods.</li><li>3 or more years of experience in scientific programming with Python.</li><li>3 or more years of experience with Molecular Dynamics including Free Energy Calculations.</li><li>Experience in computational chemistry methods development, implementation, and validation</li><li>Team-oriented with good communication skills and professional scientific presentation skills.</li><li>Ability and desire to learn new ideas and adapt to new development practices<br /> </li></ul><p><b><span>The following are a PLUS, but not required:</span></b></p><ul><li>Knowledge &amp; skill in programming and professional software development practices &amp; tools</li><li>Experience with a multi platform and/or distributed computing environment including cloud computing.</li><li>Knowledge of chemistry and/or drug discovery &amp; development</li></ul><p></p><p><b><span>Benefits:</span></b><br />OpenEye is passionate about the welfare of its employees and offers competitive benefits that include medical, dental, vision, flexible working schedule, 401k retirement plans, paid vacation, paid sick leave, home internet costs, public transportation reimbursement, and much more.</p><p></p><div><div><div><div><div><div><div><div><div><div><div><div><div><div><h2><b><span class="emphasis-3">We’re doing work that matters. Help us solve what others can’t.</span></b></h2></div></div></div></div></div></div></div></div></div></div></div></div></div></div>

PhD with postdoc in structure-based ligand design; 3+ years in Python; 3+ years in Molecular Dynamics and Free Energy Calculations; team-oriented with strong communication; ability to learn new methods.

<p><span>Over the last eight years, OpenEye Scientific has developed the field’s most advanced large-scale compute platform, Orion, built on Amazon Web Services. In this position, you will be working at the cutting edge of cloud computing, C&#43;&#43;/Python development, and advanced MD simulation techniques. Your work will have the potential to make a major impact in drug discovery, and will be available to many pharmaceutical and biotech companies.</span></p><p><b><span>OpenEye, Cadence Molecular Sciences</span></b><span> – a division of Cadence Design Systems – is an industry leader in computational molecular design through rapid, robust, and scalable software, consulting services, and Orion®, the only cloud-native fully integrated software-as-a-service molecular modeling platform. Combining unlimited computation and storage with powerful tools for data sharing, visualization and analysis in a customizable development platform, Orion offers unprecedented capabilities for the advancement of pharmaceuticals, biologics, agrochemicals, and flavors and fragrances. OpenEye, Cadence Molecular Sciences is headquartered in Santa Fe, N.M., with offices in Boston, Mass.; Cologne, Germany; and Tokyo, Japan.</span> </p><p></p><p>We are looking for a Computational Chemist/Cheminformatician to join our team of experts in mathematics, computational modeling, and medicinal chemistry.  This highly focused team will work together to drive forward technology which leverages OpenEye’s Orion platform to better enable scientists in the pharmaceutical industry working on projects from lead development to clinical candidate selection.  This role will require interactions with customers and OpenEye’s scientific and technical teams.</p><p></p><p><b><span>What you’ll do:</span></b></p><ul><li>Extend OpenEye’s programming toolkits by developing and implementing new and useful scientific and technical features to aid customers in developing bespoke solutions.</li><li>Explore methods for further enhancing OpenEye’s virtual screening platform (including OMEGA, ROCS, FastROCS, OEDocking).</li><li>Apply chemistry/cheminformatics expertise with ML experts to build robust, scalable models to support data-driven decision making.</li><li>Work on retrospective and prospective projects both internally and with collaborators to validate methodologies.</li><li>Work with Orion project team to further optimize compound design workflows in Orion.<br /> </li></ul><p><b><span>What you should have:</span></b></p><ul><li>PhD (or equivalent experience) in computational chemistry, chemistry, cheminformatics, or related field with 0 – 3 years relevant experience</li><li>Knowledge of some traditional computational chemistry approaches such as docking, virtual screening, molecular modeling, etc.</li><li>Programming expertise, ideally in c&#43;&#43; and/or python preferably with experience using AI coding agents</li><li>Experience in or desire to learn about the pharmaceutical industry</li><li>Strong desire to find practical solutions to challenging problems</li><li>Demonstrated ability to work both as part of a team and independently</li></ul><p></p><p><b><span>The following are a PLUS, but not required:</span></b></p><ul><li>Experience with OpenEye software/toolkits</li><li>Expertise with diffusion models, transformers or 3D ML representations</li><li>Experience with synthetically accessible, pharmaceutically relevant generative chemistry</li></ul><p></p><p><b><span>Benefits:</span></b><br /><span>We are passionate about the welfare of our employees and offer competitive benefits that include medical, dental, vision, flexible working schedule, 401k retirement plans, paid vacation, paid sick leave, home internet costs, public transportation reimbursement,  and much more.</span></p><p></p><p><b><i><span>Please submit your cover letter and resume as one document.</span></i></b></p><p><i><span>OpenEye Scientific Software is an Equal Opportunity Employer.</span></i></p><div><div><div><div><div><div><div><div><div><div><div><div><div><div><h2><b><span class="emphasis-3">We’re doing work that matters. Help us solve what others can’t.</span></b></h2></div></div></div></div></div></div></div></div></div></div></div></div></div></div>

Scientific Software Developer II

PhD (or equivalent) in computational chemistry, chemistry, or cheminformatics; 0–3 years experience; programming in C++ and/or Python; knowledge of docking, virtual screening, and molecular modeling; willingness to work in pharma industry; strong problem-solving and teamwork.

<p><span>Over the last eight years, OpenEye Scientific has developed the field’s most advanced large-scale compute platform, Orion, built on Amazon Web Services. In this position, you will be working at the cutting edge of cloud computing, C&#43;&#43;/Python development, and advanced MD simulation techniques. Your work will have the potential to make a major impact in drug discovery, and will be available to many pharmaceutical and biotech companies.</span></p><p><b><span>OpenEye, Cadence Molecular Sciences</span></b><span> – a division of Cadence Design Systems – is an industry leader in computational molecular design through rapid, robust, and scalable software, consulting services, and Orion®, the only cloud-native fully integrated software-as-a-service molecular modeling platform. Combining unlimited computation and storage with powerful tools for data sharing, visualization and analysis in a customizable development platform, Orion offers unprecedented capabilities for the advancement of pharmaceuticals, biologics, agrochemicals, and flavors and fragrances. OpenEye, Cadence Molecular Sciences is headquartered in Santa Fe, N.M., with offices in Boston, Mass.; Cologne, Germany; and Tokyo, Japan.</span> </p><p></p><p>We are looking for a Computational Chemist to join our team of experts in drug design, molecular modeling, and free energy calculations. This highly focused team will work together to drive forward technology which leverages OpenEye’s Orion platform to better enable scientists in the pharmaceutical industry working on projects from lead development to clinical candidate selection.  This role will require interactions with customers and OpenEye’s scientific and technical teams.</p><p></p><p><b><span>What you’ll do:</span></b></p><ul><li>Develop highly scalable and integrated workflows for relative binding free energy workflows in lead optimization</li><li>Explore machine learning models such as 3D-QSAR using large-scale relative binding free energy calculations</li><li>Develop data-driven models using 2D cheminformatics and 3D molecular shape representations</li><li>Work on retrospective and prospective projects both internally and with collaborators to validate methodologies.</li><li>Work with Orion project team to further optimize compound design workflows in Orion.<br /> </li></ul><p><b><span>What you should have:</span></b></p><ul><li>PhD (or equivalent experience) in computational chemistry, chemistry, or related field with 0 – 5 years relevant experience</li><li>Knowledge of molecular dynamics simulations, binding free energy calculations, protein-ligand interactions, or machine learning</li><li>Experience in designing hypothesis-driven computational experiments, and data-driven decision making</li><li>Programming expertise, ideally in Python, preferably with experience using AI coding agents</li><li>Experience in or desire to learn about the pharmaceutical industry</li><li>Strong desire to learn about customer problems and find practical solutions</li><li>Demonstrated ability to work both as part of a team and independently</li></ul><p></p><p><b><span>The following are a PLUS, but not required:</span></b></p><ul><li>Experience with OpenEye software/toolkits</li><li>Expertise with traditional machine learning and modern deep learning methods</li><li>Experience with synthetically accessible, pharmaceutically relevant generative chemistry</li></ul><p></p><div><div><div><div><div><div><div><div><div><div><div><div><div><div><h2><b><span class="emphasis-3">We’re doing work that matters. Help us solve what others can’t.</span></b></h2></div></div></div></div></div></div></div></div></div></div></div></div></div></div>

PhD (or equivalent) in computational chemistry/chemistry with 0–5 years experience; knowledge of molecular dynamics, binding free energy, protein-ligand interactions, and machine learning; Python programming; interest in pharma industry.

<p><span>Over the last eight years, OpenEye Scientific has developed the field’s most advanced large-scale compute platform, Orion, built on Amazon Web Services. In this position, you will be working at the cutting edge of cloud computing, C&#43;&#43;/Python development, and advanced MD simulation techniques. Your work will have the potential to make a major impact in drug discovery, and will be available to many pharmaceutical and biotech companies.</span></p><p><b><span>OpenEye, Cadence Molecular Sciences</span></b><span> – a division of Cadence Design Systems – is an industry leader in computational molecular design through rapid, robust, and scalable software, consulting services, and Orion®, the only cloud-native fully integrated software-as-a-service molecular modeling platform. Combining unlimited computation and storage with powerful tools for data sharing, visualization and analysis in a customizable development platform, Orion offers unprecedented capabilities for the advancement of pharmaceuticals, biologics, agrochemicals, and flavors and fragrances. OpenEye, Cadence Molecular Sciences is headquartered in Santa Fe, N.M., with offices in Boston, Mass.; Cologne, Germany; and Tokyo, Japan. </span></p><p></p><p><span>We are looking for a lead scientific software developer to join a growing team of experts working on biologics and protein design. The highly focused team will work together to drive forward technologies which leverage AI and OpenEye’s long standing 3D modeling capabilities in our cloud platform, Orion. The team’s guiding principle is to deliver solutions that better enable scientists in the pharmaceutical and biotech industries to develop next generation biologic medicines.</span></p><p></p><p><b><span>What you’ll do:</span></b></p><ul><li>Work on challenging problems and help find practical solutions that advance the field of computational biologics drug discovery</li><li>Develop highly scalable and integrated solutions for biologics drug discovery in the cloud</li><li>Develop data-driven models using sequence and 3D molecular shape representations leveraging AI and physics-based approaches</li><li>Expand OpenEye’s biomolecular modeling and protein informatics technologies</li><li>Collaborate with great colleagues within our group, within OpenEye &amp; Cadence, as well as within the broader pharmaceutical industry on developing new methods, tools, and solutions</li></ul><p></p><p><b><span>What you should have:</span></b></p><ul><li>PhD (or equivalent experience) in computational chemistry, structural biology, biochemistry, or related field with a least 5 years relevant experience</li><li>Strong desire to change the field of biologics drug discovery through hard work, creating robust software tools, and critical scientific evaluation.</li><li>Demonstrated ability to work both independently and as part of a team. Ability to work humbly with others, admitting mistakes and constructively working through differences in opinion.</li><li>Experience with molecular dynamics simulations and machine learning</li><li>Programming expertise, ideally in Python, preferably with experience using AI coding agents</li></ul><ul><li>Proven track record of delivering software solutions<br /> </li></ul><p><b><span>The following are a PLUS, but not required:</span></b></p><ul><li>Expertise with traditional machine learning and/or modern deep learning methods</li><li>Experience with OpenEye software/toolkits or other computational chemistry toolkits</li><li>Experience with protein language models and protein folding technologies</li><li><span>Experience with modeling antibodies based on sequence and structural data</span></li></ul><div><div><div><div><div><div><div><div><div><div><div><div><div><div><h2><b><span class="emphasis-3">We’re doing work that matters. Help us solve what others can’t.</span></b></h2></div></div></div></div></div></div></div></div></div></div></div></div></div></div>

PhD or equivalent in computational chemistry, structural biology, biochemistry, or related field; 5+ years experience; Python programming; MD simulations; AI knowledge.

Scientific Software Developer II - Modeler

PhD (or equivalent) in computational chemistry/cheminformatics with 0-3 years experience; knowledge of docking, virtual screening, molecular modeling; programming in C++ and/or Python; experience with OpenEye tools a plus; pharma industry interest.

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