Scientist I � Mesoscale Imaging and Physiology

The mission of the Allen Institute is to unlock the complexities of bioscience and advance our knowledge to improve human health. Using an open science, multi-scale, team-oriented approach, the Allen Institute focuses on accelerating foundational research, developing standards and models, and cultivating new ideas to make a broad, transformational impact on science.

We are seeking a scientist to develop and apply advanced imaging methods for studying the dynamics of multiregional brain circuits using large-scale in vivo recordings of neural activity combined with large-scale post-hoc molecular anatomy. The candidate will investigate relationships between activity patterns, the morphology and connectivity, and molecular identities of brain cells in mice, in the context of behavior. The ideal candidate will have prior experience in developing and applying optical methods, experience with neurobiology, and strong data analysis skills. This position is expected to last through November 20, 2026, but may extend based on funding.

At the Allen Institute, we believe that science is for everyone � and should be open to everyone. We are dedicated to combating biases and reducing barriers to STEM careers more broadly. We also believe that science is better when it includes different perspectives and voices. We strive to make the Allen Institute a place where everyone feels like they belong and are empowered to do their best work in a supportive environment.

We are an equal-opportunity employer and strongly encourage people from all backgrounds to apply for our open positions.

Essential Functions

• Design, analyze, and build mesoscale optical systems for physiology and anatomy experiments in mice
• Develop software for processing and analyzing resulting data
• Execute in vivo imaging experiments with behaving mice
• Analyze imaging performance and physiology data to optimize experimental sensitivity and throughput
• Communicate progress transparently with internal teams
• Develop standard operating procedures and data processing pipelines, and train team members to use them
• Present results to collaborators and the scientific community via talks, conferences, and publications

Note: Reasonable accommodations may be made to enable individuals with disabilities to perform the essential functions. This description reflects management�s assignment of essential functions; it does not proscribe or restrict the tasks that may be assigned.

Required Education and Experience

• PhD in neuroscience, biomedical engineering, or related field; or equivalent combination of degree and experience

Preferred Education and Experience

• Experience with optical engineering
• Demonstrated proficiency in conducting collaborative, multidisciplinary research
• Deep interest in fundamental questions in brain research
• Expertise in data analysis and modeling using Python
• Excellent written and verbal communication skills
• Experience mentoring and training others
• Ability to thrive in a fast-paced, team-science environment
• Strong publication record

Work Environment

• May enter laboratory environment, including potential exposure to lasers, biohazards

Physical Demands

• Fine motor movements in fingers/hands to operate computers and other office equipment; repetitive motion with lab equipment
• Stooping, bending, crouching
• Reaching, or climbing ladders

Position Type/Expected Hours of Work

• Occasional evening and weekend hours may be required
• This role is currently working onsite and is expected to work onsite for the majority of working hours. The primary work location for this role is 615 Westlake Ave N., with flexibility to work remotely on a limited basis. We are a Washington State employer; any remote work must be performed in Washington State
• This position is expected to last through November 20, 2026, but may extend based on funding

Travel

• Attendance and participation in national and/or international conferences required

Additional Comments

• **Please note, this opportunity offers relocation assistance**
• **Please note, this opportunity offers work visa sponsorship**

Annual Salary Range

• $86,150 - $106,650 *

* Final salary depends on required education for the role, experience, and level of skills relevant to the role, along with work location, where applicable.

Benefits

• Employees (and their families) are eligible to enroll in benefits per eligibility rules outlined in the Allen Institute�s Benefits Guide. These benefits include medical, dental, vision, and basic life insurance. Employees are also eligible to enroll in the Allen Institute�s 401k plan. Paid time off is also available as outlined in the Allen Institute's Benefits Guide. Details on the Allen Institute�s benefits offering are located at the following link to the Benefits Guide: https://alleninstitute.org/careers/benefits.

It is the policy of the Allen Institute to provide equal employment opportunity (EEO) to all persons regardless of age, color, national origin, citizenship status, physical or mental disability, race, religion, creed, gender, sex, sexual orientation, gender identity and/or expression, genetic information, marital status, status with regard to public assistance, veteran status, or any other characteristic protected by federal, state or local law. In addition, the Allen Institute will provide reasonable accommodations for qualified individuals with disabilities.